Changeset 12


Ignore:
Timestamp:
04/20/11 17:20:29 (9 years ago)
Author:
mmamonski
Message:

version 1.0.7 release candidate

Location:
trunk
Files:
1 added
1 deleted
41 edited

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  • trunk/.gitignore

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    r1 r12  
    1 $Id: AUTHORS 746 2008-03-06 15:07:58Z lukasz $ 
     1$Id$ 
    22 
    33Author: 
    4         Łukasz Cieśnik <lukasz.ciesnik@fedstage.com> 
     4        Łukasz Cieśnik <lukasz.ciesnik@gmail.com> 
     5 
     6Contributors (also current maintainers): 
     7       Michał Matłoka <michal.matloka@student.put.poznan.pl> 
     8       Mariusz Mamoński <mamonski@man.poznan.pl> 
    59 
    610Send bug reports to: 
    7         drmaa-pbspro-users@lists.fedstage.com 
     11       Mariusz Mamoński <mamonski@man.poznan.pl> 
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    r1 r12  
    1 # $Id: Makefile.am 2420 2009-06-24 14:40:21Z lukasz $ 
     1# $Id$ 
    22# 
    33# FedStage DRMAA for PBS Pro 
     
    2424 m4/missing-dev-prog.sh 
    2525 
    26 SUBDIRS = drmaa_utils pbs_drmaa  doc 
     26SUBDIRS = drmaa_utils pbs_drmaa 
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    r5 r12  
    1 ================================= 
    2 DRMAA for Torque/PBS Professional 
    3 ================================= 
     1The manual for the DRMAA for Torque/PBS Pro (since version 1.0.7) is available  
     2at the project wiki:  
    43 
    5 :Authors:       Åukasz Cieśnik <lukasz.ciesnik@fedstage.com>,  
    6                                 Michał Matłoka <michal.matloka@student.put.poznan.pl>,  
    7                                 Mariusz Mamonski <mamonski@man.poznan.pl> 
    8 :Contact:       Mariusz Mamonski <mamonski@man.poznan.pl> 
    9 :Date:          $Date: 2010-07-07 17:05:39 +0200 (Wed, 07 Jul 2010) $ 
    10 :Version:       1.0.3 
    11 :Revision:      $Revision: 386 $ 
    12 :Copyright:     Copyright (C) 2006-2008 FedStage Systems 
    13  
    14 :Abstract:  This document describes installation, configuration and usage 
    15   of `DRMAA for Torque/PBS Pro`_ library (PBS DRMAA for short). 
    16  
    17 .. meta:: 
    18   :http-equiv=Content-Language: en 
    19   :http-equiv=Content-Type: application/xhtml+xml; charset=UTF-8 
    20   :description lang=en: DRMAA implementation for PBS systems. 
    21   :keywords: DRMAA, PBS, Torque, PBS Professional, PBS Pro, Portable Batch System 
    22  
    23 .. contents:: 
    24  
    25 .. default-role:: literal 
    26  
    27  
    28 Introduction 
    29 ============ 
    30  
    31 DRMAA for Torque/PBS Pro is implementation of `Open Grid Forum`_ DRMAA_ 
    32 (Distributed Resource Management Application API) specification_ for 
    33 submission and control jobs to PBS_ systems: `PBS Professional`_, Torque_ 
    34 and OpenPBS_.  Using DRMAA, grid applications builders, portal developers 
    35 and ISVs can use the same high-level API to link their software with 
    36 different cluster/resource management systems. 
    37  
    38 This software also enables the integration of `SMOA Computing`_ 
    39 with the underlying Torque/PBS Pro system for remote multi-user job submission 
    40 and control over Web Services. 
    41  
    42 This manual can be found in HTML and PDF formats in ``doc`` directory. 
    43  
    44  
    45 Installation 
    46 ============ 
    47  
    48 To compile the library just go to main source directory and type:: 
    49  
    50   $ ./configure [--prefix=/installation/directory] && make 
    51  
    52 If you had installed PBS in a non standard directory pass it 
    53 in ``--with-pbs`` configure parameter.  There are no unusual requirements 
    54 for basic usage of library: ANSI C compiler and standard make should 
    55 suffice (if linking against PBS Professional you will need also the OpenSSL library).   
    56 If you have taken sources directly from SVN repository you would  
    57 need additional `developer tools`_. For further information regarding GNU  
    58 build system see the INSTALL file. 
    59  
    60 For Torque_ it is advised to configure queues so jobs are leaved after 
    61 the completion.  To achieve this simply type the following command for 
    62 all queues which are intended to use with PBS DRMAA:: 
    63  
    64   # qmgr -c "set queue QUEUE_NAME keep_completed = 60" 
    65  
    66 The value of the ``keep_completed`` parameter denotes a number of 
    67 seconds jobs will have to wait in the queue after the completion (and 
    68 should be greater then ``pool_delay`` value in PBS DRMAA configuration_). 
    69 It enables the DRMAA library to retrieve the information about finished 
    70 jobs. 
    71  
    72 Alternatively you can configure the DRMAA library to use Torque server daemon logs 
    73 as information source for terminated jobs (consult next section for details)  
    74  
    75 Configuration 
    76 ============= 
    77  
    78 During DRMAA session initialization (``drmaa_init``) library tries to read 
    79 its configuration parameters from locations: 
    80 ``/etc/pbs_drmaa.conf``, ``~/.pbs_drmaa.conf`` and from file given in 
    81 ``PBS_DRMAA_CONF`` environment variable (if set to non-empty string). 
    82 If multiple configuration sources are present then all configurations 
    83 are merged with values from user-defined files taking precedence 
    84 (in following order: ``$PBS_DRMAA_CONF``, ``~/.pbs_drmaa.conf``, 
    85 ``/etc/pbs_drmaa.conf``). 
    86  
    87 Currently recognized configuration parameters are: 
    88  
    89   pool_delay 
    90     Amount of time (in seconds) between successive checks of unfinished job(s). 
    91  
    92      Type: integer, Default: 5 
    93  
    94   wait_thread 
    95     Value 1 enables single "wait thread" for updating jobs status.  
    96     With ``pbs_home`` set enables wait_thread which reads PBS log files (instead of polling PBS daemons). 
    97       
    98      Type: integer, Default: 0 
    99  
    100   pbs_home 
    101     Path to Torque/PBS Pro spool directory that contains server logs (e.g.: /var/spool/pbs). 
    102      
    103      Type: string, Default: not set 
    104       
    105   job_categories 
    106     Dictionary of job categories.  It's keys are job categories names 
    107     mapped to `native specification`_ strings.  Attributes set by 
    108     job category can be overridden by corresponding DRMAA attributes 
    109     or native specification.  Special category name ``default`` 
    110     is used when ``drmaa_job_category`` job attribute was not set. 
    111  
    112   cache_job_state 
    113     According to the DRMAA specification every `drmaa_job_ps()` call should 
    114     query DRM system for job state.  With this option one may optimize 
    115     communication with DRM.  If set to positive integer `drmaa_job_ps()` 
    116     returns remembered job state without communicating with DRM for 
    117     `cache_job_state` seconds since last update.  By default library 
    118     conforms to specification (no caching will be performed). 
    119  
    120     Type: integer, default: 0 
    121  
    122  
    123 .. table:: 
    124   Different modes of operation 
    125  
    126   =========== ========= =========== ======================= =================================== 
    127   wait_thread pbs_home     mode     keep_completed needed         comments 
    128   =========== ========= =========== ======================= =================================== 
    129        0       not set   polling           yes              default configuration 
    130        1       not set   polling           yes              more effective than above 
    131        1         set     triggered         no               read access to server logs needed 
    132   =========== ========= =========== ======================= =================================== 
    133    
    134  
    135 Configuration file syntax 
    136 ------------------------- 
    137  
    138 Configuration file is in form a dictionary. 
    139 Dictionary is set of zero or more key-value pairs. 
    140 Key is a string while value could be a string, an integer 
    141 or another dictionary. 
    142 :: 
    143  
    144   configuration: dictionary | dictionary_body 
    145   dictionary: '{' dictionary_body '}' 
    146   dictionary_body: (string ':' value ',')* 
    147   value: integer | string | dictionary 
    148   string: unquoted-string | single-quoted-string | double-quoted-string 
    149   unquoted-string: [^ \t\n\r:,0-9][^ \t\n\r:,]* 
    150   single-quoted-string: '[^']*' 
    151   double-quoted-string: "[^"]*" 
    152   integer: [0-9]+ 
    153  
    154 Configuration file example 
    155 -------------------------- 
    156  
    157 :: 
    158    
    159   # pbs_drmaa.conf - Sample pbs_drmaa configuration file. 
    160    
    161   wait_thread: 0, 
    162  
    163   #pool_delay: 5, 
    164  
    165   job_categories: { 
    166         #default: "-k n", # delete output files from execution hosts 
    167         longterm: "-p -100 -l nice=5", 
    168         amd64: "-l arch=amd64", 
    169         python: "-l software=python", 
    170         java: "-l software=java,vmem=500mb -v PATH=/opt/sun-jdk-1.6:/usr/bin:/bin", 
    171         #test: "-u test -q testing", 
    172   }, 
    173    
    174  
    175 Native specification 
    176 ==================== 
    177  
    178 DRMAA interface allows to pass DRM dependant job submission options. 
    179 Those options may be specified by settings ``drmaa_native_specification``. ``drmaa_native_specification`` 
    180 accepts space delimited ``qsub``. ``qsub`` 
    181 options which does not set job attributes (`-b`, `-z`, `-C`) as 
    182 well as meant for submission of interactive jobs (`-I`, `-X`) or 
    183 to specify directories (`-d`, `-D`) are *not* supported. 
    184 Also instead of `-W` option following long options are accepted 
    185 within native specification: `--depend`, `--group-list`, `--stagein` 
    186 and `--stageout`.  For detailed description of each option see PBS 
    187 documentation. 
    188  
    189 Attributes set in native specification overrides corresponding DRMAA job 
    190 attributes. 
    191  
    192 .. table:: 
    193   Native specification strings with corresponding DRMAA attributes. 
    194  
    195   ===================== =============== ============ ==================== 
    196   DRMAA attribute       PBS attribute   PBS resource native specification 
    197   ===================== =============== ============ ==================== 
    198                       Attributes which get overridden                    
    199   ----------------------------------------------------------------------- 
    200   drmaa_job_name        Job_Name                     `-N` job name        
    201   drmaa_output_path     Output_Path                  `-o` output path     
    202   drmaa_error_path      Error_Path                   `-e` error path      
    203   drmaa_join_files      Join_Path                    `-j` join options    
    204   drmaa_block_email     Mail_Points                  `-m` mail options    
    205   drmaa_start_time      Execution_Time               `-a` start time      
    206   drmaa_js_state        Hold_Types                   `-h`                 
    207   ..                    Account_Name                 `-A` account string  
    208   ..                    Checkpoint                   `-c` interval        
    209   ..                    Keep_Files                   `-k` keep            
    210   ..                    Priority                     `-p` priority        
    211   ..                    destination                  `-q` queue           
    212   ..                    Rerunable                    `-r` y/n             
    213   ..                    Shell_Path_List              `-S` path list       
    214   ..                    User_List                    `-u` user list       
    215   ..                    group_list                   `--group_list=`\groups  
    216   drmaa_v_env           Variable_List                `-v` variable list   
    217   ..                    Variable_List                `-V`                 
    218   drmaa_v_email         Mail_Users                   `-M` user list       
    219   drmaa_duration_hlimit Resource_List   cput         `-l cput=`\limit     
    220   drmaa_wct_hlimit      Resource_List   walltime     `-l walltime=`\limit 
    221   ..                    Resource_List                `-l` resources       
    222   ..                    depend                       `--depend=`\dependency 
    223   ..                    stagein                      `--stagein=`\stagein  
    224   ..                    stageout                     `--stageout=`\stageout 
    225   ===================== =============== ============ ==================== 
    226  
    227  
    228 Release notes 
    229 ============= 
    230  
    231 Changes in 1.0.5 release 
    232 ------------------------ 
    233  * make drmaa tolerant to torque restarts 
    234  * now one can use '-lmem' in native specification attribute 
    235  
    236 Changes in 1.0.4 release 
    237 ------------------------ 
    238  * fix "mtime" date parsing ('triggered' mode) 
    239  * fix "submit_args" attribute bug (PBS Professional only) 
    240  
    241 Changes in 1.0.3 release 
    242 ------------------------ 
    243  
    244  * new implementation of the "wait thread" which reads PBS log files (increased scalability) 
    245  * support for native specification attribute 
    246  * memleak fixes 
    247  * testsuite passed on PBS Pro 10 
    248  * exit codes 126-127 cause the drmaa_wifaborted() to return true 
    249  * other bug fixes 
    250  
    251 Changes in 1.0.2 release 
    252 ------------------------ 
    253  
    254  * automatic reconnect on PBS connection errors  
    255  * static linkage with DRMAA utilities 
    256  * other bug fixes 
    257   
    258 Changes in 1.0.1 release 
    259 ------------------------ 
    260  
    261  * number of attributes implemented: 
    262  
    263    - ``drmaa_start_time`` 
    264    - ``drmaa_duration_hlimit`` 
    265    - ``drmaa_wct_hlimit`` 
    266    - ``drmaa_native_specification`` 
    267    - ``drmaa_job_category`` 
    268  
    269  * configuration file(s) 
    270  * separate wait thread 
    271  * lot of bug fixes 
    272  * more robust code 
    273  * separated DRMAA utilities library 
    274  * Python driven test-suite 
    275  
    276  
    277 Known bugs and limitations 
    278 -------------------------- 
    279  
    280 Library covers nearly all DRMAA 1.0 specification_ with exceptions 
    281 listed below.  It passes the `official DRMAA test-suite`_ except of tests 
    282 which require job termination status.  All mandatory and some optional 
    283 job attributes (namely: transfer files, wall clock time hard limit, 
    284 job run duration hard limit) are implemented. 
    285  
    286 Known limitations imposed by PBS API: 
    287  
    288  * With `PBS Pro`_ (and OpenPBS_) retrieving of job termination status is 
    289    impossible.  For this DRM finished jobs are marked as done with 0 
    290    return code unless job was terminated through library when they are 
    291    treated as aborted and killed after receiving SIGTERM. 
    292  
    293  * Library accepts job identifiers only of those jobs which 
    294    were submitted under current session (specification says it should 
    295    also accept job identifiers from previous sessions and even of 
    296    jobs submitted in former execution of DRMAA enabled application). 
    297    This could only be partially fixed as job state needs to be kept by 
    298    library in order to cope with PBS shortcomings. 
    299  
    300  * Job termination (when job is running) is realized by PBS 
    301    by sending SIGTERM and/or SIGKILL therefore retrieving 
    302    those signals cannot be distinguished from abort using 
    303    ``drmaa_control(DRMAA_CONTROL_TERMINATE)``.  Then job termination 
    304    state is marked as "aborted" and "signaled" whatever is the state. 
    305  
    306  * ``drmaa_wcoredump()`` always returns ``false``. 
    307  
    308  * Waiting functions (``drmaa_wait()`` and ``drmaa_synchronize()``) 
    309    must pool DRM to find out whether job finished. 
    310  
    311  
    312 Test-suite 
    313 ---------- 
    314  
    315 The DRMAA for Torque/PBS Pro library was successfully tested with 
    316 `PBS Pro`_ 10 (10.0.0.82981) and Torque_ 2.5.1 on Linux OS.  Following 
    317 table presents results of tests from 
    318 `Official DRMAA test-suite`_ (originally developed for Sun Grid Engine). 
    319  
    320 .. table:: 
    321   Mode - Polling 
    322  
    323   =============================================== =========== ============  
    324                   Test name                        PBS Pro 10  Torque 2.5.1  
    325   =============================================== =========== ============  
    326   test_mt_exit_during_submit                        passed       passed            
    327   test_mt_exit_during_submit_or_wait                passed       passed            
    328   test_mt_submit_before_init_wait                   passed       passed             
    329   test_mt_submit_mt_wait                            passed       passed             
    330   test_mt_submit_wait                               passed       passed             
    331   test_st_attribute_change                          passed       passed             
    332   test_st_bulk_singlesubmit_wait_individual         passed       passed             
    333   test_st_bulk_submit_in_hold_session_delete        passed       passed             
    334   test_st_bulk_submit_in_hold_session_release       passed       passed             
    335   test_st_bulk_submit_in_hold_single_delete         passed       passed             
    336   test_st_bulk_submit_in_hold_single_release        passed       passed             
    337   test_st_bulk_submit_wait                          passed       passed             
    338   test_st_contact                                   passed       passed             
    339   test_st_drm_system                                passed       passed             
    340   test_st_drmaa_impl                                passed       passed             
    341   test_st_empty_session_control                     passed       passed             
    342   test_st_empty_session_synchronize_dispose         passed       passed             
    343   test_st_empty_session_synchronize_nodispose       passed       passed             
    344   test_st_empty_session_wait                        passed       passed             
    345   test_st_error_file_failure                      FAILED [1]_    passed        
    346   test_st_exit_status                             FAILED [1]_    passed        
    347   test_st_input_file_failure                      FAILED [1]_    passed        
    348   test_st_mult_exit                                 passed       passed         
    349   test_st_mult_init                                 passed       passed          
    350   test_st_output_file_failure                     FAILED [1]_    passed       
    351   test_st_submit_in_hold_delete                     passed       passed          
    352   test_st_submit_in_hold_release                    passed       passed          
    353   test_st_submit_kill_sig                         FAILED [1]_    passed        
    354   test_st_submit_polling_synchronize_timeout        passed       passed         
    355   test_st_submit_polling_synchronize_zerotimeout    passed       passed         
    356   test_st_submit_polling_wait_timeout               passed       passed         
    357   test_st_submit_polling_wait_zerotimeout           passed       passed        
    358   test_st_submit_suspend_resume_wait                passed       passed        
    359   test_st_submit_wait                               passed       passed        
    360   test_st_submitmixture_sync_all_dispose            passed       passed       
    361   test_st_submitmixture_sync_all_nodispose          passed       passed        
    362   test_st_submitmixture_sync_allids_dispose         passed       passed       
    363   test_st_submitmixture_sync_allids_nodispose       passed       passed      
    364   test_st_supported_attr                            passed       passed     
    365   test_st_supported_vattr                           passed       passed     
    366   test_st_usage_check                               passed       passed     
    367   test_st_version                                   passed       passed     
    368   =============================================== =========== ============  
    369  
    370 .. [1] Due to unavailability of job termination status. 
    371  
    372 .. table:: 
    373   Mode - Triggered 
    374  
    375   =============================================== =========== ============  
    376                   Test name                        PBS Pro 10  Torque 2.5.1  
    377   =============================================== =========== ============  
    378   test_mt_exit_during_submit                        passed       passed            
    379   test_mt_exit_during_submit_or_wait                passed       passed            
    380   test_mt_submit_before_init_wait                   passed       passed             
    381   test_mt_submit_mt_wait                            passed       passed             
    382   test_mt_submit_wait                               passed       passed             
    383   test_st_attribute_change                          passed       passed             
    384   test_st_bulk_singlesubmit_wait_individual         passed       passed             
    385   test_st_bulk_submit_in_hold_session_delete        passed       passed             
    386   test_st_bulk_submit_in_hold_session_release       passed       passed             
    387   test_st_bulk_submit_in_hold_single_delete         passed       passed             
    388   test_st_bulk_submit_in_hold_single_release        passed       passed             
    389   test_st_bulk_submit_wait                          passed       passed             
    390   test_st_contact                                   passed       passed             
    391   test_st_drm_system                                passed       passed             
    392   test_st_drmaa_impl                                passed       passed             
    393   test_st_empty_session_control                     passed       passed             
    394   test_st_empty_session_synchronize_dispose         passed       passed             
    395   test_st_empty_session_synchronize_nodispose       passed       passed             
    396   test_st_empty_session_wait                        passed       passed             
    397   test_st_error_file_failure                        passed       passed          
    398   test_st_exit_status                               passed       passed         
    399   test_st_input_file_failure                        passed       passed         
    400   test_st_mult_exit                                 passed       passed         
    401   test_st_mult_init                                 passed       passed          
    402   test_st_output_file_failure                       passed       passed         
    403   test_st_submit_in_hold_delete                     passed       passed          
    404   test_st_submit_in_hold_release                    passed       passed          
    405   test_st_submit_kill_sig                           passed       passed         
    406   test_st_submit_polling_synchronize_timeout        passed       passed         
    407   test_st_submit_polling_synchronize_zerotimeout    passed       passed         
    408   test_st_submit_polling_wait_timeout               passed       passed         
    409   test_st_submit_polling_wait_zerotimeout           passed       passed        
    410   test_st_submit_suspend_resume_wait                passed       passed        
    411   test_st_submit_wait                               passed       passed        
    412   test_st_submitmixture_sync_all_dispose            passed       passed       
    413   test_st_submitmixture_sync_all_nodispose          passed       passed        
    414   test_st_submitmixture_sync_allids_dispose         passed       passed       
    415   test_st_submitmixture_sync_allids_nodispose       passed       passed      
    416   test_st_supported_attr                            passed       passed     
    417   test_st_supported_vattr                           passed       passed     
    418   test_st_usage_check                               passed       passed     
    419   test_st_version                                   passed       passed     
    420   =============================================== =========== ============  
    421  
    422 Developers 
    423 ========== 
    424  
    425 Core functionality of DRMAA is put into ``drmaa_utils`` library. 
    426 This library was created in order to keep consistent common functionality 
    427 of `DRMAA for Torque/PBS Pro`_ and other DRMAA libraries.  As it is 
    428 independent from any particular DRM you may found this library useful for 
    429 developing other DRMAAs. 
    430  
    431 Developer tools 
    432 --------------- 
    433 Although not needed for library user the following tools may be required 
    434 if you intend to develop DRMAA for Torque/PBS Pro library or run tests: 
    435  
    436  * GNU autotools (autoconf, automake, libtool), 
    437  * Bison_ parser generator, 
    438  * gperf_ perfect hash function generator, 
    439  * Python_ (with development files) for Docutils_ and running test-suite 
    440    (at least 2.5 version but not Python 3.* which will introduce 
    441    incompatibilities), 
    442  * Pyrex_ a Language for writing Python extension modules (>=0.9.6), 
    443  * Docutils_ for processing this ``README``, 
    444  * LaTeX_ for creating documentation in PDF format, 
    445  * Doxygen_ for generating code documentation. 
    446  
    447 .. _Bison:     http://www.gnu.org/software/bison/ 
    448 .. _gperf:     http://www.gnu.org/software/gperf/ 
    449 .. _Python:    http://www.python.org/ 
    450 .. _Pyrex:     http://www.cosc.canterbury.ac.nz/greg.ewing/python/Pyrex/ 
    451 .. _Docutils:  http://docutils.sourceforge.net/ 
    452 .. _LaTeX:     http://www.latex-project.org/ 
    453 .. _Doxygen:   http://www.stack.nl/~dimitri/doxygen/ 
    454  
    455  
    456  
    457 Contact 
    458 ======= 
    459  
    460 The DRMAA library for Torque and PBSPro is curently maintained by `Poznan Supercomputing and Networking Center`_. Please send  
    461 your comments, questions and bug reports to:  
    462  
    463    Mariusz Mamonski <mamonski@man.poznan.pl> 
    464  
    465  
    466  
    467  
    468 .. _DRMAA: http://drmaa.org/ 
    469 .. _Open Grid Forum: http://www.gridforum.org/ 
    470 .. _specification: http://www.ogf.org/documents/GFD.22.pdf 
    471 .. _Official DRMAA test-suite: http://www.drmaa.org/wiki/index.php?pagename=DrmaaTestsuite 
    472 .. _FedStage DRMAA for PBS Pro: 
    473   http://www.fedstage.com/wiki/FedStage_DRMAA_for_PBS_Pro 
    474 .. _PBS DRMAA: http://www.fedstage.com/wiki/FedStage_DRMAA_for_PBS_Pro 
    475 .. _FedStage Computing: http://www.fedstage.com/wiki/FedStage_Computing 
    476 .. _PBS: http://en.wikipedia.org/wiki/Portable_Batch_System 
    477 .. _PBS Professional: http://www.pbsgridworks.com/ 
    478 .. _PBS Pro: http://www.pbsgridworks.com/ 
    479 .. _Torque: http://www.clusterresources.com/pages/products/torque-resource-manager.php 
    480 .. _OpenPBS: http://www.openpbs.org/ 
    481 .. _Poznan Supercomputing and Networking Center: http://www.man.poznan.pl/online/en/ 
    482  
    483  
    484 License 
    485 ======= 
    486  
    487 Copyright (C) 2006-2008 FedStage Systems 
    488  
    489 This program is free software: you can redistribute it and/or modify 
    490 it under the terms of the `GNU General Public License`_ as published 
    491 by the Free Software Foundation, either version 3 of the License, or 
    492 (at your option) any later version. 
    493  
    494 This program is distributed in the hope that it will be useful, 
    495 but WITHOUT ANY WARRANTY; without even the implied warranty of 
    496 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the 
    497 GNU General Public License for more details. 
    498  
    499 You should have received a copy of the `GNU General Public License`_ 
    500 along with this program.  If not, see <http://www.gnu.org/licenses/>. 
    501  
    502  
    503 GNU General Public License 
    504 -------------------------- 
    505 Version 3, 29 June 2007 
    506  
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    843     in accord with this section must be in a format that is publicly 
    844     documented (and with an implementation available to the public in 
    845     source code form), and must require no special password or key for 
    846     unpacking, reading or copying. 
    847      
    848 7.  Additional Terms. 
    849      
    850     "Additional permissions" are terms that supplement the terms of this 
    851     License by making exceptions from one or more of its conditions. 
    852     Additional permissions that are applicable to the entire Program shall 
    853     be treated as though they were included in this License, to the extent 
    854     that they are valid under applicable law.  If additional permissions 
    855     apply only to part of the Program, that part may be used separately 
    856     under those permissions, but the entire Program remains governed by 
    857     this License without regard to the additional permissions. 
    858      
    859     When you convey a copy of a covered work, you may at your option 
    860     remove any additional permissions from that copy, or from any part of 
    861     it.  (Additional permissions may be written to require their own 
    862     removal in certain cases when you modify the work.)  You may place 
    863     additional permissions on material, added by you to a covered work, 
    864     for which you have or can give appropriate copyright permission. 
    865      
    866     Notwithstanding any other provision of this License, for material you 
    867     add to a covered work, you may (if authorized by the copyright holders of 
    868     that material) supplement the terms of this License with terms: 
    869      
    870      a) Disclaiming warranty or limiting liability differently from the 
    871         terms of sections 15 and 16 of this License; or 
    872      
    873      b) Requiring preservation of specified reasonable legal notices or 
    874         author attributions in that material or in the Appropriate Legal 
    875         Notices displayed by works containing it; or 
    876      
    877      c) Prohibiting misrepresentation of the origin of that material, or 
    878         requiring that modified versions of such material be marked in 
    879         reasonable ways as different from the original version; or 
    880      
    881      d) Limiting the use for publicity purposes of names of licensors or 
    882         authors of the material; or 
    883      
    884      e) Declining to grant rights under trademark law for use of some 
    885         trade names, trademarks, or service marks; or 
    886      
    887      f) Requiring indemnification of licensors and authors of that 
    888         material by anyone who conveys the material (or modified versions of 
    889         it) with contractual assumptions of liability to the recipient, for 
    890         any liability that these contractual assumptions directly impose on 
    891         those licensors and authors. 
    892      
    893     All other non-permissive additional terms are considered "further 
    894     restrictions" within the meaning of section 10.  If the Program as you 
    895     received it, or any part of it, contains a notice stating that it is 
    896     governed by this License along with a term that is a further 
    897     restriction, you may remove that term.  If a license document contains 
    898     a further restriction but permits relicensing or conveying under this 
    899     License, you may add to a covered work material governed by the terms 
    900     of that license document, provided that the further restriction does 
    901     not survive such relicensing or conveying. 
    902      
    903     If you add terms to a covered work in accord with this section, you 
    904     must place, in the relevant source files, a statement of the 
    905     additional terms that apply to those files, or a notice indicating 
    906     where to find the applicable terms. 
    907      
    908     Additional terms, permissive or non-permissive, may be stated in the 
    909     form of a separately written license, or stated as exceptions; 
    910     the above requirements apply either way. 
    911      
    912 8.  Termination. 
    913      
    914     You may not propagate or modify a covered work except as expressly 
    915     provided under this License.  Any attempt otherwise to propagate or 
    916     modify it is void, and will automatically terminate your rights under 
    917     this License (including any patent licenses granted under the third 
    918     paragraph of section 11). 
    919      
    920     However, if you cease all violation of this License, then your 
    921     license from a particular copyright holder is reinstated (a) 
    922     provisionally, unless and until the copyright holder explicitly and 
    923     finally terminates your license, and (b) permanently, if the copyright 
    924     holder fails to notify you of the violation by some reasonable means 
    925     prior to 60 days after the cessation. 
    926      
    927     Moreover, your license from a particular copyright holder is 
    928     reinstated permanently if the copyright holder notifies you of the 
    929     violation by some reasonable means, this is the first time you have 
    930     received notice of violation of this License (for any work) from that 
    931     copyright holder, and you cure the violation prior to 30 days after 
    932     your receipt of the notice. 
    933      
    934     Termination of your rights under this section does not terminate the 
    935     licenses of parties who have received copies or rights from you under 
    936     this License.  If your rights have been terminated and not permanently 
    937     reinstated, you do not qualify to receive new licenses for the same 
    938     material under section 10. 
    939      
    940 9.  Acceptance Not Required for Having Copies. 
    941      
    942     You are not required to accept this License in order to receive or 
    943     run a copy of the Program.  Ancillary propagation of a covered work 
    944     occurring solely as a consequence of using peer-to-peer transmission 
    945     to receive a copy likewise does not require acceptance.  However, 
    946     nothing other than this License grants you permission to propagate or 
    947     modify any covered work.  These actions infringe copyright if you do 
    948     not accept this License.  Therefore, by modifying or propagating a 
    949     covered work, you indicate your acceptance of this License to do so. 
    950      
    951 10. Automatic Licensing of Downstream Recipients. 
    952      
    953     Each time you convey a covered work, the recipient automatically 
    954     receives a license from the original licensors, to run, modify and 
    955     propagate that work, subject to this License.  You are not responsible 
    956     for enforcing compliance by third parties with this License. 
    957      
    958     An "entity transaction" is a transaction transferring control of an 
    959     organization, or substantially all assets of one, or subdividing an 
    960     organization, or merging organizations.  If propagation of a covered 
    961     work results from an entity transaction, each party to that 
    962     transaction who receives a copy of the work also receives whatever 
    963     licenses to the work the party's predecessor in interest had or could 
    964     give under the previous paragraph, plus a right to possession of the 
    965     Corresponding Source of the work from the predecessor in interest, if 
    966     the predecessor has it or can get it with reasonable efforts. 
    967      
    968     You may not impose any further restrictions on the exercise of the 
    969     rights granted or affirmed under this License.  For example, you may 
    970     not impose a license fee, royalty, or other charge for exercise of 
    971     rights granted under this License, and you may not initiate litigation 
    972     (including a cross-claim or counterclaim in a lawsuit) alleging that 
    973     any patent claim is infringed by making, using, selling, offering for 
    974     sale, or importing the Program or any portion of it. 
    975      
    976 11. Patents. 
    977      
    978     A "contributor" is a copyright holder who authorizes use under this 
    979     License of the Program or a work on which the Program is based.  The 
    980     work thus licensed is called the contributor's "contributor version". 
    981      
    982     A contributor's "essential patent claims" are all patent claims 
    983     owned or controlled by the contributor, whether already acquired or 
    984     hereafter acquired, that would be infringed by some manner, permitted 
    985     by this License, of making, using, or selling its contributor version, 
    986     but do not include claims that would be infringed only as a 
    987     consequence of further modification of the contributor version.  For 
    988     purposes of this definition, "control" includes the right to grant 
    989     patent sublicenses in a manner consistent with the requirements of 
    990     this License. 
    991      
    992     Each contributor grants you a non-exclusive, worldwide, royalty-free 
    993     patent license under the contributor's essential patent claims, to 
    994     make, use, sell, offer for sale, import and otherwise run, modify and 
    995     propagate the contents of its contributor version. 
    996      
    997     In the following three paragraphs, a "patent license" is any express 
    998     agreement or commitment, however denominated, not to enforce a patent 
    999     (such as an express permission to practice a patent or covenant not to 
    1000     sue for patent infringement).  To "grant" such a patent license to a 
    1001     party means to make such an agreement or commitment not to enforce a 
    1002     patent against the party. 
    1003      
    1004     If you convey a covered work, knowingly relying on a patent license, 
    1005     and the Corresponding Source of the work is not available for anyone 
    1006     to copy, free of charge and under the terms of this License, through a 
    1007     publicly available network server or other readily accessible means, 
    1008     then you must either (1) cause the Corresponding Source to be so 
    1009     available, or (2) arrange to deprive yourself of the benefit of the 
    1010     patent license for this particular work, or (3) arrange, in a manner 
    1011     consistent with the requirements of this License, to extend the patent 
    1012     license to downstream recipients.  "Knowingly relying" means you have 
    1013     actual knowledge that, but for the patent license, your conveying the 
    1014     covered work in a country, or your recipient's use of the covered work 
    1015     in a country, would infringe one or more identifiable patents in that 
    1016     country that you have reason to believe are valid. 
    1017      
    1018     If, pursuant to or in connection with a single transaction or 
    1019     arrangement, you convey, or propagate by procuring conveyance of, a 
    1020     covered work, and grant a patent license to some of the parties 
    1021     receiving the covered work authorizing them to use, propagate, modify 
    1022     or convey a specific copy of the covered work, then the patent license 
    1023     you grant is automatically extended to all recipients of the covered 
    1024     work and works based on it. 
    1025      
    1026     A patent license is "discriminatory" if it does not include within 
    1027     the scope of its coverage, prohibits the exercise of, or is 
    1028     conditioned on the non-exercise of one or more of the rights that are 
    1029     specifically granted under this License.  You may not convey a covered 
    1030     work if you are a party to an arrangement with a third party that is 
    1031     in the business of distributing software, under which you make payment 
    1032     to the third party based on the extent of your activity of conveying 
    1033     the work, and under which the third party grants, to any of the 
    1034     parties who would receive the covered work from you, a discriminatory 
    1035     patent license (a) in connection with copies of the covered work 
    1036     conveyed by you (or copies made from those copies), or (b) primarily 
    1037     for and in connection with specific products or compilations that 
    1038     contain the covered work, unless you entered into that arrangement, 
    1039     or that patent license was granted, prior to 28 March 2007. 
    1040      
    1041     Nothing in this License shall be construed as excluding or limiting 
    1042     any implied license or other defenses to infringement that may 
    1043     otherwise be available to you under applicable patent law. 
    1044      
    1045 12. No Surrender of Others' Freedom. 
    1046      
    1047     If conditions are imposed on you (whether by court order, agreement or 
    1048     otherwise) that contradict the conditions of this License, they do not 
    1049     excuse you from the conditions of this License.  If you cannot convey a 
    1050     covered work so as to satisfy simultaneously your obligations under this 
    1051     License and any other pertinent obligations, then as a consequence you may 
    1052     not convey it at all.  For example, if you agree to terms that obligate you 
    1053     to collect a royalty for further conveying from those to whom you convey 
    1054     the Program, the only way you could satisfy both those terms and this 
    1055     License would be to refrain entirely from conveying the Program. 
    1056      
    1057 13. Use with the GNU Affero General Public License. 
    1058      
    1059     Notwithstanding any other provision of this License, you have 
    1060     permission to link or combine any covered work with a work licensed 
    1061     under version 3 of the GNU Affero General Public License into a single 
    1062     combined work, and to convey the resulting work.  The terms of this 
    1063     License will continue to apply to the part which is the covered work, 
    1064     but the special requirements of the GNU Affero General Public License, 
    1065     section 13, concerning interaction through a network will apply to the 
    1066     combination as such. 
    1067      
    1068 14. Revised Versions of this License. 
    1069      
    1070     The Free Software Foundation may publish revised and/or new versions of 
    1071     the GNU General Public License from time to time.  Such new versions will 
    1072     be similar in spirit to the present version, but may differ in detail to 
    1073     address new problems or concerns. 
    1074      
    1075     Each version is given a distinguishing version number.  If the 
    1076     Program specifies that a certain numbered version of the GNU General 
    1077     Public License "or any later version" applies to it, you have the 
    1078     option of following the terms and conditions either of that numbered 
    1079     version or of any later version published by the Free Software 
    1080     Foundation.  If the Program does not specify a version number of the 
    1081     GNU General Public License, you may choose any version ever published 
    1082     by the Free Software Foundation. 
    1083      
    1084     If the Program specifies that a proxy can decide which future 
    1085     versions of the GNU General Public License can be used, that proxy's 
    1086     public statement of acceptance of a version permanently authorizes you 
    1087     to choose that version for the Program. 
    1088      
    1089     Later license versions may give you additional or different 
    1090     permissions.  However, no additional obligations are imposed on any 
    1091     author or copyright holder as a result of your choosing to follow a 
    1092     later version. 
    1093      
    1094 15. Disclaimer of Warranty. 
    1095      
    1096     THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY 
    1097     APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT 
    1098     HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY 
    1099     OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, 
    1100     THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR 
    1101     PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM 
    1102     IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF 
    1103     ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 
    1104      
    1105 16. Limitation of Liability. 
    1106      
    1107     IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING 
    1108     WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS 
    1109     THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY 
    1110     GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE 
    1111     USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF 
    1112     DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD 
    1113     PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), 
    1114     EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF 
    1115     SUCH DAMAGES. 
    1116      
    1117 17. Interpretation of Sections 15 and 16. 
    1118      
    1119     If the disclaimer of warranty and limitation of liability provided 
    1120     above cannot be given local legal effect according to their terms, 
    1121     reviewing courts shall apply local law that most closely approximates 
    1122     an absolute waiver of all civil liability in connection with the 
    1123     Program, unless a warranty or assumption of liability accompanies a 
    1124     copy of the Program in return for a fee. 
    1125  
    1126 END OF TERMS AND CONDITIONS 
    1127  
    1128 How to Apply These Terms to Your New Programs 
    1129 ............................................. 
    1130  
    1131 If you develop a new program, and you want it to be of the greatest 
    1132 possible use to the public, the best way to achieve this is to make it 
    1133 free software which everyone can redistribute and change under these terms. 
    1134  
    1135 To do so, attach the following notices to the program.  It is safest 
    1136 to attach them to the start of each source file to most effectively 
    1137 state the exclusion of warranty; and each file should have at least 
    1138 the "copyright" line and a pointer to where the full notice is found. 
    1139 :: 
    1140  
    1141     <one line to give the program's name and a brief idea of what it does.> 
    1142     Copyright (C) <year>  <name of author> 
    1143  
    1144     This program is free software: you can redistribute it and/or modify 
    1145     it under the terms of the GNU General Public License as published by 
    1146     the Free Software Foundation, either version 3 of the License, or 
    1147     (at your option) any later version. 
    1148  
    1149     This program is distributed in the hope that it will be useful, 
    1150     but WITHOUT ANY WARRANTY; without even the implied warranty of 
    1151     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the 
    1152     GNU General Public License for more details. 
    1153  
    1154     You should have received a copy of the GNU General Public License 
    1155     along with this program.  If not, see <http://www.gnu.org/licenses/>. 
    1156  
    1157 Also add information on how to contact you by electronic and paper mail. 
    1158  
    1159 If the program does terminal interaction, make it output a short 
    1160 notice like this when it starts in an interactive mode:: 
    1161  
    1162     <program>  Copyright (C) <year>  <name of author> 
    1163     This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. 
    1164     This is free software, and you are welcome to redistribute it 
    1165     under certain conditions; type `show c' for details. 
    1166  
    1167 The hypothetical commands ``show w`` and ``show c`` should show the 
    1168 appropriate parts of the General Public License.  Of course, your 
    1169 program's commands might be different; for a GUI interface, you would 
    1170 use an "about box". 
    1171  
    1172 You should also get your employer (if you work as a programmer) or school, 
    1173 if any, to sign a "copyright disclaimer" for the program, if necessary. 
    1174 For more information on this, and how to apply and follow the GNU GPL, see 
    1175 <http://www.gnu.org/licenses/>. 
    1176  
    1177 The GNU General Public License does not permit incorporating your program 
    1178 into proprietary programs.  If your program is a subroutine library, you 
    1179 may consider it more useful to permit linking proprietary applications with 
    1180 the library.  If this is what you want to do, use the GNU Lesser General 
    1181 Public License instead of this License.  But first, please read 
    1182 <http://www.gnu.org/philosophy/why-not-lgpl.html>. 
    1183  
    1184  
    1185  
    1186 .. role:: raw-html(raw) 
    1187   :format: html 
    1188 .. role:: raw-latex(raw) 
    1189   :format: latex 
    1190 .. |--|   unicode:: U+02013 .. en dash 
    1191   :trim: 
    1192 .. |---|  unicode:: U+02014 .. em dash 
    1193 .. |LaTeX| replace:: :raw-html:`LaTeX` :raw-latex:`\LaTeX{}` 
    1194  
    1195 .. vim: ft=rest 
    1196 .. vim700: spell spelllang=en 
     4  http://apps.man.poznan.pl/trac/pbs-drmaa/wiki 
  • trunk/TODO

    • Property svn:keywords set to Id
  • trunk/autoclean.sh

    • Property svn:keywords set to Id
    r1 r12  
    11#!/bin/sh 
    2 # $Id: autoclean.sh 2420 2009-06-24 14:40:21Z lukasz $ 
     2# $Id$ 
    33 
    44echo "Removing all generated files. ($PWD)" 
  • trunk/autogen.sh

    • Property svn:keywords set to Id
  • trunk/configure.ac

    • Property svn:keywords set to Id
    r11 r12  
    11AC_INIT([DRMAA for PBS Pro], [1.0.7], [mamonski@man.poznan.pl], [pbs-drmaa]) 
    22AC_PREREQ(2.59) 
    3 AC_REVISION([$Id: configure.ac 2694 2009-09-12 17:17:35Z mmamonski $]) 
     3AC_REVISION([$Id$]) 
    44AC_COPYRIGHT([ 
    5 DRMAA for PBS Pro 
     5DRMAA for Torque/PBS Professional 
    66Copyright (C) 2006-2009  FedStage Systems 
     7Copyright (C) 2011  Poznan Supercomputing and Networking Center 
    78 
    89This program is free software: you can redistribute it and/or modify 
     
    3940                        [produce code suiteable for debugging and print logs at runtime])) 
    4041AC_ARG_ENABLE(development, AC_HELP_STRING([--enable-development], 
    41                         [enable development mode: make additional checks (suiteable for FedStage DRMAA for PBS Pro developers)])) 
     42                        [enable development mode: make additional checks (suiteable for developers)])) 
    4243 
    4344# programs: 
     
    5253# code generation tools: 
    5354AX_GPERF 
    54  
    55 # reStructuredText processing: 
    56 AX_DOCUTILS() 
    57 if test x$RST2HTML = x; then 
    58         RST2HTML="sh m4/missing-dev-prog.sh docutils" 
    59 fi 
    60 if test x$RST2LATEX = x; then 
    61         RST2LATEX="sh m4/missing-dev-prog.sh docutils" 
    62 fi 
    6355 
    6456# check compiler / set basic flags: 
     
    177169        Makefile 
    178170        pbs_drmaa/Makefile 
    179         doc/Makefile 
    180171]) 
    181172AC_CONFIG_HEADERS([config.h]) 
  • trunk/m4/ac_c_bigendian_cross.m4

    • Property svn:keywords set to Id
  • trunk/m4/acx_pthread.m4

    • Property svn:keywords set to Id
    r1 r12  
    1 dnl $Id: acx_pthread.m4 529 2007-12-20 21:04:22Z lukasz $ 
     1dnl $Id$ 
    22 
    33dnl 
  • trunk/m4/ax_docutils.m4

    • Property svn:keywords set to Id
    r1 r12  
    1 # $Id: ax_docutils.m4 2420 2009-06-24 14:40:21Z lukasz $ 
     1# $Id$ 
    22# 
    33# SYNOPSIS 
  • trunk/m4/ax_gcc_warnings.m4

    • Property svn:keywords set to Id
    r1 r12  
    1 # $Id: ax_gcc_warnings.m4 2420 2009-06-24 14:40:21Z lukasz $ 
     1# $Id$ 
    22# 
    33# SYNOPSIS 
     
    77# DESCRIPTION 
    88# 
    9 #   Check for LSF libraries and headers. 
     9#   Check for supported gcc options. 
    1010# 
    1111#   This macro calls:: 
     
    2020# LICENSE 
    2121# 
    22 #   Written by Łukasz Cieśnik <lukasz.ciesnik@fedstage.com> 
     22#   Written by Łukasz Cieśnik <lukasz.ciesnik@gmail.com> 
    2323#   and placed under Public Domain. 
    2424# 
  • trunk/m4/ax_gperf.m4

    • Property svn:keywords set to Id
    r1 r12  
    1 # $Id: ax_gperf.m4 2420 2009-06-24 14:40:21Z lukasz $ 
     1# $Id$ 
    22# 
    33# SYNOPSIS 
     
    2222# LICENSE 
    2323# 
    24 #   Written by Łukasz Cieśnik <lukasz.ciesnik@fedstage.com> 
     24#   Written by Łukasz Cieśnik <lukasz.ciesnik@gmail.com> 
    2525#   and placed under Public Domain 
    2626# 
  • trunk/m4/ax_pbs.m4

    • Property svn:keywords set to Id
    r1 r12  
    1 # $Id: ax_pbs.m4 2420 2009-06-24 14:40:21Z lukasz $ 
     1# $Id$ 
    22# 
    33# SYNOPSIS 
     
    2121# LICENSE 
    2222# 
    23 #   Written by Łukasz Cieśnik <lukasz.ciesnik@fedstage.com> 
     23#   Written by Łukasz Cieśnik <lukasz.ciesnik@gmail.com> 
    2424#   and placed under Public Domain 
    2525# 
  • trunk/m4/bison_ylwrap.sh

    • Property svn:keywords set to Id
  • trunk/m4/missing-dev-prog.sh

    • Property svn:keywords set to Id
  • trunk/pbs_drmaa/.gitignore

    • Property svn:keywords set to Id
  • trunk/pbs_drmaa/CHANGELOG

    • Property svn:keywords set to Id
  • trunk/pbs_drmaa/Makefile.am

    • Property svn:keywords set to Id
    r7 r12  
    1 # $Id: Makefile.am 2420 2009-06-24 14:40:21Z lukasz $ 
     1# $Id$ 
    22#  
    33# FedStage DRMAA for PBS Professional 
  • trunk/pbs_drmaa/drmaa.c

    • Property svn:keywords set to Id
    r1 r12  
    1 /* $Id: drmaa.c 353 2010-10-18 13:45:14Z mamonski $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
  • trunk/pbs_drmaa/job.c

    • Property svn:keywords set to Id
    r10 r12  
    1 /* $Id: job.c 370 2010-11-16 09:51:00Z mamonski $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
     
    4343                __attribute__ ((unused)) 
    4444#       endif 
    45         = "$Id: job.c 370 2010-11-16 09:51:00Z mamonski $"; 
     45        = "$Id$"; 
    4646#endif 
    4747 
     
    385385                int hours, minutes, seconds; 
    386386                long mem; 
    387                 if( cpu_usage && sscanf( cpu_usage, "%d:%d:%d", 
    388                                 &hours, &minutes, &seconds ) == 3 ) 
     387                if( cpu_usage && sscanf( cpu_usage, "%d:%d:%d", &hours, &minutes, &seconds ) == 3 ) 
    389388                 { 
    390389                        self->cpu_usage = 60*( 60*hours + minutes ) + seconds; 
     
    401400                        fsd_log_debug(( "vmem_usage: %s=%ldB", vmem_usage, self->vmem_usage )); 
    402401                 } 
    403                 if( walltime && sscanf( walltime, "%d:%d:%d", 
    404                                         &hours, &minutes, &seconds ) == 3 ) 
     402                if( walltime && sscanf( walltime, "%d:%d:%d", &hours, &minutes, &seconds ) == 3 ) 
    405403                 { 
    406404                        self->walltime = 60*( 60*hours + minutes ) + seconds; 
     
    414412{ 
    415413        pbsdrmaa_session_t *pbssession = (pbsdrmaa_session_t*)self->session; 
    416          
     414 
    417415        if( pbssession->pbs_home == NULL ) 
    418416                pbsdrmaa_job_on_missing_standard( self );        
     
    429427 
    430428        fsd_log_enter(( "({job_id=%s})", self->job_id )); 
    431         fsd_log_warning(( "self %s missing from DRM queue", self->job_id )); 
     429        fsd_log_warning(( "Job %s missing from DRM queue", self->job_id )); 
    432430 
    433431        switch( session->missing_jobs ) 
     
    465463        } 
    466464 
     465        fsd_cond_broadcast( &self->status_cond); 
     466 
    467467        fsd_log_return(( "; job_ps=%s, exit_status=%d", 
    468468                                drmaa_job_ps_to_str(self->state), self->exit_status )); 
     
    476476         
    477477        fsd_log_enter(( "({job_id=%s})", self->job_id )); 
    478         fsd_log_warning(( "self %s missing from DRM queue", self->job_id )); 
     478        fsd_log_info(( "Job %s missing from DRM queue", self->job_id )); 
    479479         
    480480        TRY 
  • trunk/pbs_drmaa/job.h

    • Property svn:keywords set to Id
    r8 r12  
    1 /* $Id: job.h 2 2009-10-12 09:51:22Z mamonski $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
  • trunk/pbs_drmaa/log_reader.c

    • Property svn:keywords set to Id
    r8 r12  
    1 /* $Id: log_reader.c 323 2010-09-21 21:31:29Z mmatloka $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
  • trunk/pbs_drmaa/log_reader.h

    • Property svn:keywords set to Id
    r8 r12  
    1 /* $Id: log_reader.h 323 2010-09-21 21:31:29Z mmatloka $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
  • trunk/pbs_drmaa/pbs_attrib.gperf

    • Property svn:keywords set to Id
    r4 r12  
    11%{ 
    2 /* $Id: pbs_attrib.gperf 2677 2009-09-08 14:32:22Z mmamonski $ */ 
     2/* $Id$ */ 
    33/* 
    44 *  FedStage DRMAA for PBS Pro 
     
    3131                __attribute__ ((unused)) 
    3232#       endif 
    33         = "$Id: pbs_attrib.gperf 2677 2009-09-08 14:32:22Z mmamonski $"; 
     33        = "$Id$"; 
    3434#endif 
    3535 
  • trunk/pbs_drmaa/pbs_attrib.h

    • Property svn:keywords set to Id
    r4 r12  
    1 /* $Id: pbs_attrib.h 256 2010-08-10 16:31:35Z mamonski $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
  • trunk/pbs_drmaa/pbs_drmaa.conf.example

    • Property svn:keywords set to Id
    r1 r12  
    1 # $Id: pbs_drmaa.conf.example 2420 2009-06-24 14:40:21Z lukasz $ 
     1# $Id$ 
    22# pbs_drmaa.conf - Sample pbs_drmaa configuration file. 
    33 
  • trunk/pbs_drmaa/pbs_drmaa.h

    • Property svn:keywords set to Id
    r1 r12  
    1 /* $Id: pbs_drmaa.h 2 2009-10-12 09:51:22Z mamonski $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
  • trunk/pbs_drmaa/session.c

    • Property svn:keywords set to Id
    r10 r12  
    1 /* $Id: session.c 385 2011-01-04 18:24:05Z mamonski $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
     
    5353                __attribute__ ((unused)) 
    5454#       endif 
    55         = "$Id: session.c 385 2011-01-04 18:24:05Z mamonski $"; 
     55        = "$Id$"; 
    5656#endif 
    5757 
     
    213213        fsd_conf_option_t *pbs_home; 
    214214        pbs_home = fsd_conf_dict_get(self->configuration, "pbs_home" ); 
    215         if( pbs_home ) 
    216          { 
    217                 if( pbs_home->type == FSD_CONF_STRING ) 
    218                  { 
     215 
     216        if( pbs_home && pbs_home->type == FSD_CONF_STRING ) 
     217          { 
    219218                        struct stat statbuf; 
    220219                        char * volatile log_path; 
     
    222221                         
    223222                        pbsself->pbs_home = pbs_home->val.string; 
    224                         fsd_log_debug(("pbs_home: %s",pbsself->pbs_home)); 
     223                        fsd_log_info(("pbs_home: %s",pbsself->pbs_home)); 
    225224                        pbsself->super_wait_thread = pbsself->super.wait_thread; 
    226225                        pbsself->super.wait_thread = pbsdrmaa_session_wait_thread;               
     
    230229                        localtime_r(&pbsself->log_file_initial_time,&tm); 
    231230 
    232                         if((log_path = fsd_asprintf("%s/server_logs/%04d%02d%02d", 
    233                                 pbsself->pbs_home,        
    234                                 tm.tm_year + 1900, 
    235                                 tm.tm_mon + 1, 
    236                                         tm.tm_mday)) == NULL) { 
    237                                 fsd_exc_raise_fmt(FSD_ERRNO_INTERNAL_ERROR,"WT - Memory allocation wasn't possible"); 
    238                         } 
    239  
    240                         if(stat(log_path,&statbuf) == -1) { 
     231                        log_path = fsd_asprintf("%s/server_logs/%04d%02d%02d", 
     232                                        pbsself->pbs_home, 
     233                                        tm.tm_year + 1900, 
     234                                        tm.tm_mon + 1, 
     235                                        tm.tm_mday); 
     236 
     237                        if(stat(log_path,&statbuf) == -1) 
     238                          { 
    241239                                char errbuf[256] = "InternalError"; 
    242                                 (void)strerror_r(errno, errbuf, 256); 
     240                                (void)strerror_r(errno, errbuf, sizeof(errbuf)); 
    243241                                fsd_exc_raise_fmt(FSD_ERRNO_INTERNAL_ERROR,"stat error: %s",errbuf); 
    244                         } 
     242                          } 
    245243         
    246244                        fsd_log_debug(("Log file %s size %d",log_path,(int) statbuf.st_size)); 
    247245                        pbsself->log_file_initial_size = statbuf.st_size; 
    248246                        fsd_free(log_path); 
    249                  } 
    250                 else 
    251                 { 
    252                         pbsself->super.enable_wait_thread = false; 
    253                         pbsself->wait_thread_log = false; 
    254                         fsd_log_debug(("pbs_home not configured. Running standard wait_thread (pooling).")); 
    255                 } 
    256          } 
    257  
    258  
     247          } 
    259248 
    260249        pbsself->super_apply_configuration(self); /* call method from the superclass */ 
     
    277266                conn_lock = fsd_mutex_lock( &self->drm_connection_mutex ); 
    278267retry: 
    279  
     268/* TODO: query only for user's jobs pbs_selstat + ATTR_u */ 
    280269#ifdef PBS_PROFESSIONAL 
    281270                status = pbs_statjob( pbsself->pbs_conn, NULL, NULL, NULL ); 
     
    494483                        fsd_log_warning(( "no default queue set on PBS server" )); 
    495484                else if( keep_completed == NULL && self->pbs_home == NULL ) 
    496                         fsd_log_warning(( "PBS server is not configured to keep completed jobs\n" 
     485                        fsd_log_warning(( "Torque server is not configured to keep completed jobs\n" 
    497486                                                "in Torque: set keep_completed parameter of default queue\n" 
    498487                                                "  $ qmgr -c 'set queue batch keep_completed = 60'\n" 
     
    513502         } 
    514503        END_TRY 
     504 
     505        return result; 
    515506#endif 
     507        fsd_log_warning(( "PBS Professional does not keep information about the completed jobs\n" 
     508                                " You must configure DRMAA to utilize log files in order to always get valid job exit status" 
     509                                )); 
    516510        return false; 
    517511} 
  • trunk/pbs_drmaa/session.h

    • Property svn:keywords set to Id
    r7 r12  
    1 /* $Id: session.h 323 2010-09-21 21:31:29Z mmatloka $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
  • trunk/pbs_drmaa/submit.c

    • Property svn:keywords set to Id
    r10 r12  
    1 /* $Id: submit.c 386 2011-01-06 18:13:33Z mamonski $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
     
    4646                __attribute__ ((unused)) 
    4747#       endif 
    48         = "$Id: submit.c 386 2011-01-06 18:13:33Z mamonski $"; 
     48        = "$Id$"; 
    4949#endif 
    5050 
     
    546546                        else 
    547547                        { 
    548                                 fsd_exc_raise_fmt(FSD_DRMAA_ERRNO_INVALID_ATTRIBUTE_VALUE, "Invalid native specification: %s (Invalid resource specification: %s)", resources, arg); 
    549  
     548                                fsd_exc_raise_fmt(FSD_DRMAA_ERRNO_INVALID_ATTRIBUTE_VALUE, "Invalid native specification: %s (Invalid resource specification: %s)", resources, arg); 
    550549                        } 
    551550                } 
     
    569568        TRY 
    570569          { 
    571                 for (arg = strtok_r(add_attr_copy, ",", &ctxt); arg; arg = strtok_r(NULL, ":",&ctxt) ) 
     570                for (arg = strtok_r(add_attr_copy, ";", &ctxt); arg; arg = strtok_r(NULL, ";",&ctxt) ) 
    572571                { 
    573572                        name = fsd_strdup(strtok_r(arg, "=", &ctxt2)); 
     
    606605 
    607606                TRY 
    608                  { 
     607                  { 
    609608                        for (arg = strtok_r(native_spec_copy, " \t", &ctxt); arg; arg = strtok_r(NULL, " \t",&ctxt) ) { 
    610                                 if (!opt) { 
    611                                         if ( (arg[0] != '-') || ((strlen(arg) != 2) &&  arg[2] != ' ' && arg[1] !='-' ) ) 
     609                                if (!opt) 
     610                                  { 
     611                                        if ( (arg[0] != '-') || (strlen(arg) != 2) ) 
    612612                                                fsd_exc_raise_fmt(FSD_DRMAA_ERRNO_INVALID_ATTRIBUTE_VALUE, 
    613                                                                 "Invalid native specification: %s", 
    614                                                                 native_specification); 
    615                                         if(arg[1] == '-') { 
    616                                                 parse_additional_attr(pbs_attr, arg+2); 
     613                                                        "Invalid native specification: -o(ption) expected (arg=%s native=%s).", 
     614                                                        arg, native_specification); 
     615 
     616                                                case 'h' : 
     617                                                        pbs_attr->set_attr( pbs_attr, "Hold_Types" , arg ); 
     618                                                        break; 
     619 
     620                                        opt = arg[1]; 
     621 
     622                                        /* handle NO-arg options */ 
     623 
     624                                        switch (opt) { 
     625                                                case 'h' : 
     626                                                        pbs_attr->set_attr( pbs_attr, "Hold_Types" , "u" ); 
     627                                                        break; 
     628                                                default : 
     629                                                        continue; /*no NO-ARG option */ 
    617630                                        } 
    618                                         else { 
    619                                                 opt = arg[1]; 
    620                                         } 
    621                                          
    622                                 } else { 
     631 
     632                                        opt = 0; 
     633                                  } 
     634                                else 
     635                                  { 
    623636                                        switch (opt) { 
    624637                                                 
     
    644657                                                        pbs_attr->set_attr( pbs_attr, "Execution_Time" , arg ); 
    645658                                                        break; 
    646                                                 case 'h' : 
    647                                                         pbs_attr->set_attr( pbs_attr, "Hold_Types" , arg ); 
    648                                                         break; 
    649659                                                case 'A' : 
    650660                                                        pbs_attr->set_attr( pbs_attr, "Account_Name" , arg ); 
     
    672682                                                        break; 
    673683                                                case 'v' : 
    674                                                 case 'V' : 
    675684                                                        pbs_attr->set_attr( pbs_attr, "Variable_List" , arg ); 
    676685                                                        break; 
     
    687696                                                                        native_specification, opt); 
    688697                                        } 
    689  
    690698                                        opt = 0; 
    691699                                } 
  • trunk/pbs_drmaa/submit.h

    • Property svn:keywords set to Id
    r1 r12  
    1 /* $Id: submit.h 338 2010-09-28 14:48:45Z mamonski $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
  • trunk/pbs_drmaa/util.c

    • Property svn:keywords set to Id
    r8 r12  
    1 /* $Id: util.c 323 2010-09-21 21:31:29Z mmatloka $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
     
    4141                __attribute__ ((unused)) 
    4242#       endif 
    43         = "$Id: util.c 323 2010-09-21 21:31:29Z mmatloka $"; 
     43        = "$Id$"; 
    4444#endif 
    4545 
  • trunk/pbs_drmaa/util.h

    • Property svn:keywords set to Id
    r8 r12  
    1 /* $Id: util.h 323 2010-09-21 21:31:29Z mmatloka $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  FedStage DRMAA for PBS Pro 
  • trunk/test/Makefile

    • Property svn:keywords set to Id
  • trunk/test/example.c

    • Property svn:keywords set to Id
    r1 r12  
    1 /* $Id: example.c 2 2009-10-12 09:51:22Z mamonski $ */ 
     1/* $Id$ */ 
    22/* 
    33 *  DRMAA library for Torque/PBS 
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