| 33 | | == Current deployment == |
| 34 | | |
| 35 | | === Local testbed - grass1 === |
| 36 | | {{{ |
| 37 | | module load muscle2/devel |
| 38 | | }}} |
| 39 | | **Limited resource. Only one node. Use PL-Grid sites instead! ** |
| 40 | | === PL-Grid sites === |
| 41 | | The PL-Grid e-infrastructure gives you access to reasonable computational power (> 230 Teraflops). You can use it both for production and test runs. If you want to debug/test your application interactively use `-I` option of the `qsub` command, e.g: |
| 42 | | {{{ |
| 43 | | [reef] /home/plgrid/plgmamonski/reef > qsub -I -q plgrid-testing |
| 44 | | qsub: waiting for job 6742856.ce.reef.man.poznan.pl to start |
| 45 | | qsub: job 6742856.ce.reef.man.poznan.pl ready |
| 46 | | |
| 47 | | [r399] /home/plgrid/plgmamonski/reef > |
| 48 | | [r399] /home/plgrid/plgmamonski/reef > module load muscle2/devel |
| 49 | | java/jdk1.6.0_23 load complete. |
| 50 | | intel/10.1 load complete. |
| 51 | | 'openmpi/current' load complete. |
| 52 | | }}} |
| 53 | | **Do not run anything computational intensive at the frontend/ui machine as your account might be banned.** |
| 54 | | ==== Zeus (Cyfronet - Krakow) ==== |
| 55 | | Add the two following line to your `.bashrc`: |
| 56 | | {{{ |
| 57 | | export QCG_SCRIPTS_DIR=/software/grid/plgrid/qcg-app-scripts/app-scripts/ |
| 58 | | . $QCG_SCRIPTS_DIR/common-mod.qcg |
| 59 | | }}} |
| 60 | | After next login you should be able to see the `muscle2` modules: |
| 61 | | {{{ |
| 62 | | $module avail muscle2 |
| 63 | | ---------------------/mnt/lustre/scratch/groups/plggmuscle/.qcg-modules ------ |
| 64 | | muscle2/devel |
| 65 | | $module load muscle2 |
| 66 | | java/current load complete. |
| 67 | | 'openmpi/current' load complete. |
| 68 | | $muscle2 --version |
| 69 | | This is the Multiscale Coupling Library and Environment (MUSCLE) 2.0 |
| 70 | | Revision: $Rev: 404 $ from $Date: 2012-06-28 15:34:05 +0200 (Thu, 28 Jun 2012) $: running in 64-bit mode |
| 71 | | }}} |
| 72 | | ==== Reef (PSNC - Poznan) ==== |
| 73 | | Like Zeus, but set: |
| 74 | | {{{ |
| 75 | | export QCG_SCRIPTS_DIR=/opt/exp_soft/plgrid/qcg-app-scripts/app-scripts/ |
| 76 | | . $QCG_SCRIPTS_DIR/common-mod.qcg |
| 77 | | }}} |
| 78 | | in your `~/.bashrc` file. |
| 79 | | ==== Galera (TASK - Gdansk) ==== |
| 80 | | Frontend machine: |
| 81 | | * ui.grid.task.gda.pl |
| 82 | | Like Zeus, but set: |
| 83 | | {{{ |
| 84 | | export QCG_SCRIPTS_DIR=/opt/exp_soft/plgrid/qcg-app-scripts/app-scripts/ |
| 85 | | . $QCG_SCRIPTS_DIR/common-mod.qcg |
| 86 | | }}} |
| 87 | | in your `~/.bashrc` file. |
| 88 | | |
